Research Articles

• Yanai I*, Baugh LR*, Smith JJ, Roehrig C, Shen-Orr SS, Claggett JM, Hill AA, Slonim DK, Hunter CP. Pairing of competitive and topologically distinct regulatory modules enhances patterned gene expression. Molecular Systems Biology. 2008 4:163.
Supplementary Materials

• Yanai I*, Korbel JO*, Boue S*, McWeeney SK, Bork P, Lercher MJ. Similar gene expression profiles do not imply similar tissue functions. Trends in Genetics 2006 22:132-8.
Supplementary Materials

• Kopelman N, Lancet D, and Yanai I. Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms. Nature Genetics 2005 37:588-589.
Supplementary Materials

• Cohen-Gihon I, Lancet D, and Yanai I. Modular genes with metazoan-specific domains are enriched in tissue-specificity. Trends in Genetics 2005 21:210-213.

• Yanai I, Benjamin-Rodrig H, Shmoish M, Chalifa-Caspi V, Ophir R, Bar-Even A, Shklar M, Horn-Saban S, Safran M, Domany E, Lancet D, Shmueli O. Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics. 2005 5:650-659.

• Yanai I*, Yu Y*, Yu X, Cantor CR, Weng Z. An avidin-like domain that does not bind biotin is adopted for oligomerization by the extracellular mosaic protein fibropellin. Protein Science. 2005 14: 417-423.

• Yanai I, Graur D, Ophir R. Incongruent expression profiles between human and mouse orthologous genes suggest widespread neutral evolution of transcription control. OMICS 2004 8:15-24
   
• Yanai I, DeLisi C. The society of genes: networks of functional links between genes by comparative genomics. Genome Biol. 2002;3(11):RESEARCH0064.

• Yanai I, Wolf YI, Koonin EV. Evolution of gene fusions: horizontal transfer versus independent events. Genome Biol. 2002;3(5):RESEARCH0024.

• Yanai I, Mellor JC, DeLisi C. Identifying functional links between genes using conserved chromosomal proximity. Trends Genet. 2002 Apr;18(4):176-9.

• Mellor JC*, Yanai I*, Clodfelter KH, Mintseris J, DeLisi C. Predictome: a database of putative functional links between proteins. Nucleic Acids Res. 2002 Jan 1;30(1):306-9.

• Yanai I, Derti A, DeLisi C. Genes linked by fusion events are generally of the same functional category: a systematic analysis of 30 microbial genomes. Proc Natl Acad Sci U S A. 2001 Jul 3;98(14):7940-5.
   
• Glusman G, Yanai I, Rubin I, Lancet D. The complete human olfactory subgenome. Genome Res. 2001 May;11(5):685-702.
   
• Yanai I, Camacho CJ, DeLisi C. Predictions of gene family distributions in microbial genomes: evolution by gene duplication and modification. Phys Rev Lett. 2000 Sep 18;85(12):2641-4.
   

    Reviews and other publications

• Yanai I. Neutrality and selection in the evolution of gene family sizes. Power Laws, Scale-free Networks and Genome Biology. Editor: Koonin, Eugene V. (2004)

• Yanai, I. Encyclopedia entry: Connecting genes by comparative genomics. Encyclopedia of Genomics, Proteomics and Bioinformatics, edited by Michael Dunn, Lynn Jorde, Peter Little And Shankar Subramaniam (2004).

• Yanai, I., Derti, A., DeLisi, C. Beyond sequence similarity, or sequence analysis in the age of the genome. Functional Genomics, eds. Galas DJ and McCormack SJ (2002).

• Yanai, I. Brave New Patents: The Law of DNA Worship. Journal of BioLaw & Business, Vol. 4, No. 2, 2001.

• Yanai, I. Meeting report: The integrated world of functional genomics. Genome Biol. 2002;4(301).